About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7627215_7628890_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7627215 - 7628890
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCAGA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTACCTTTTATT
Flanking Amino Acid:
GRKIGGNKIKVDFANRESQL
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
66.7
40.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
39.4
-1.2
2.7
48.6
47.2
Minor BPS
61.8
0.45
1.6
78.06
38.1

Associated Gene:

Gene:
SPEN
Ensembl Gene ID:
ENSAPLG00000012618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025914
7596803 - 7645609
48807
ENSAPLT00000023169
7596682 - 7645609
48928
ENSAPLT00000013149
7593474 - 7644251
50778