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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7642266_7642752_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7642266 - 7642752
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGGAGC
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTGACTTAATT
Flanking Amino Acid:
QLEGVARRMMVESDYCLLLA
Intron Amino Acid Position:
3476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
60.7
44
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
89.4
0.89
0.7
81.6
35.5
Minor 5ss
31.7
-2.1
3.3
39.9
41
Minor BPS
73.5
0.81
1.6
88.84
36.2

Associated Gene:

Gene:
SPEN
Ensembl Gene ID:
ENSAPLG00000012618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023169
7596682 - 7645609
48928
ENSAPLT00000013149
7593474 - 7644251
50778
ENSAPLT00000045169
7596803 - 7645609
48807
ENSAPLT00000036760
7596803 - 7645609
48807
ENSAPLT00000025914
7596803 - 7645609
48807