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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7673732_7680547_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7673732 - 7680547
Intron Length:
6816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTCTTTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GAAGGACGAACT
Flanking Amino Acid:
GTPITQRFSHSACYYDANQS
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.5
0.73
0.7
77.1
31.6
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
36
-0.9
2.1
50.2
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027307
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024287
7673469 - 7684111
10643