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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_769365_769500_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
769365 - 769500
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAATAATT
5'SS Class:
major
3'SS Sequence:
CTCCTCAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCCTCCTCAATT
Flanking Amino Acid:
KSVDNQMDKYIVTIMGKSES
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
79.4
33.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
68.8
0.42
0.9
66.9
33
Minor 5ss
41.9
-0.9
3.2
63.3
41
Minor BPS
69.3
0.69
1.5
79.83
42.7

Associated Gene:

Gene:
MMEL1
Ensembl Gene ID:
ENSAPLG00000006431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006765
743753 - 769550
25798