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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7712868_7713500_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7712868 - 7713500
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CATCTCTGATGT
Flanking Amino Acid:
EEEQEKPILDRPTRISQPED
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.8
75
35.2
Major BPS
79
0.72
1
69
38.9
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
28.6
-2.5
3.4
37.5
47.2
Minor BPS
43.8
-0.3
1.9
58.93
44

Associated Gene:

Gene:
SZRD1
Ensembl Gene ID:
ENSAPLG00000021047
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027311
7712581 - 7713603
1023