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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7719982_7720488_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7719982 - 7720488
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTGTC
5'SS Class:
major
3'SS Sequence:
TGGCTGCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCCCTCTGACCT
Flanking Amino Acid:
PVQLPGTPITDSLLSWPQPA
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
72.3
37.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
63
0.29
1.1
57.8
43.2
Minor 5ss
38.8
-1.3
3.1
52.5
44.7
Minor BPS
45.8
-0.2
1.7
57.07
45.7

Associated Gene:

Gene:
SLC2A1
Ensembl Gene ID:
ENSAPLG00000005941
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048389
7717224 - 7780506
63283