About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7761667_7769482_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7761667 - 7769482
Intron Length:
7816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
TTCTCCTTCACG
Flanking Amino Acid:
EMGSRERGQGMTARLMLAVG
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.5
38.7
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
73.3
0.53
0.8
68.9
30.4
Minor 5ss
26.2
-2.7
2.9
22.7
37.4
Minor BPS
70.5
0.5
1.8
75.03
43.2

Associated Gene:

Gene:
SLC2A1
Ensembl Gene ID:
ENSAPLG00000005941
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048389
7717224 - 7780506
63283