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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7776362_7776784_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7776362 - 7776784
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AAAGTCTTACCC
Flanking Amino Acid:
MPGGWGWRPQVIEDFYNRTW
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82.7
0.74
0.7
76.8
25.1
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
50.4
-0
1.7
58.22
40.5

Associated Gene:

Gene:
SLC2A1
Ensembl Gene ID:
ENSAPLG00000005941
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006222
7776332 - 7780506
4175