About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7789468_7790853_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7789468 - 7790853
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGCCAA
5'SS Class:
major
3'SS Sequence:
ATATTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAT
Flanking Amino Acid:
EQALYHLANDIYLASSTFGL
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.3
61.1
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.7
0.69
0.9
77.6
40.8
Minor 5ss
33.1
-1.9
3
37.6
40.6
Minor BPS
74.5
0.85
1.2
85.98
33.4

Associated Gene:

Gene:
ZMYND12
Ensembl Gene ID:
ENSAPLG00000005847
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006046
7789174 - 7792715
3542