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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7791024_7792068_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7791024 - 7792068
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTTGTCATT
Flanking Amino Acid:
AYLLLAEACIGVGHHLQASK
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.1
37.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
42.2
-0.9
2.9
56.1
42.2
Minor BPS
48.9
-0
2.3
78.3
39.3

Associated Gene:

Gene:
ZMYND12
Ensembl Gene ID:
ENSAPLG00000005847
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006046
7789174 - 7792715
3542