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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7792241_7792655_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7792241 - 7792655
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCTGGCACC
5'SS Class:
weak_major
3'SS Sequence:
TTTATCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATCC
Flanking Amino Acid:
QHLLQLELCHKYIIDLTYST
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.4
63
40
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.1
0.77
0.8
78.2
30.4
Minor 5ss
27.7
-2.6
3.9
41
38.2
Minor BPS
60.2
0.3
1.8
72.55
38.3

Associated Gene:

Gene:
ZMYND12
Ensembl Gene ID:
ENSAPLG00000005847
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006046
7789174 - 7792715
3542