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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7799019_7800180_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7799019 - 7800180
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTAACGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTTTCCTAACG
Flanking Amino Acid:
KIQSSEGPLQITMKMVPKML
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.1
37.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
70.7
0.47
0.9
67.2
32.8
Minor 5ss
25.6
-2.8
3.1
31.9
42.9
Minor BPS
65.8
0.36
1.8
72.75
39.6

Associated Gene:

Gene:
PPCS
Ensembl Gene ID:
ENSAPLG00000020945
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032677
7798250 - 7800576
2327