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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7820655_7821520_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7820655 - 7821520
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCAAT
5'SS Class:
major
3'SS Sequence:
CTTTGGTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
GCCTCAGTGATA
Flanking Amino Acid:
RYQSSETLHKRCREVIENIE
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.2
71.7
39.5
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
74.4
0.55
1
68.6
42
Minor 5ss
43.5
-0.7
2.6
57.7
46.7
Minor BPS
43.4
-0.5
2.2
51.53
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005509
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005725
7816220 - 7833965
17746