About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7821714_7826314_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7821714 - 7826314
Intron Length:
4601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCATTCTTAATC
Flanking Amino Acid:
ESEVEGLHWKMLESCQETIE
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.7
0.69
0.9
72.8
42.2
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
74.9
0.76
1.1
74.44
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005509
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005725
7816220 - 7833965
17746