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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7826441_7828738_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7826441 - 7828738
Intron Length:
2298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGGC
5'SS Class:
major
3'SS Sequence:
TCTGACCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACCT
Flanking Amino Acid:
LREDLKAEKKASELVQESEQ
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.1
56.9
42.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
77.1
0.61
0.9
69.7
36.4
Minor 5ss
28.6
-2.5
3.6
41.7
45
Minor BPS
61.8
0.45
1.8
81.31
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005509
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005725
7816220 - 7833965
17746