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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7830147_7831847_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7830147 - 7831847
Intron Length:
1701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGACA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTCCCATGACC
Flanking Amino Acid:
AGSLNGSIKQSMSEERFQQQ
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74
36.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.5
0.6
0.9
69.6
36.8
Minor 5ss
38.6
-1.3
3
49.3
46.7
Minor BPS
62.3
0.37
1.6
72.7
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005509
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005725
7816220 - 7833965
17746