Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7832022_7833728_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7832022 - 7833728

Intron Length:

1707

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGAAACTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTCTTTTGAAAC

Flanking Amino Acid:

NLLLQQECTKVKVELKQARA

Intron Amino Acid Position:

401

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

74.4

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

70.6

0.46

67.9

41.6

Minor 5ss

32.4

-2

3.1

40.9

45.1

Minor BPS

57.7

0.22

1.5

67.73

37.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005509

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005725

7816220 - 7833965

17746