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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7864691_7868232_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7864691 - 7868232
Intron Length:
3542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGAATTTCAATT
Flanking Amino Acid:
NVRNGYGFINRNDTKEDVFV
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.2
0.75
0.9
76.5
37.7
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
51
0.11
1.5
66.19
38.6

Associated Gene:

Gene:
YBX1
Ensembl Gene ID:
ENSAPLG00000004899
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048396
7864151 - 7873838
9688
ENSAPLT00000034367
7863898 - 7872669
8772
ENSAPLT00000005056
7864151 - 7873838
9688