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Intron Name: Anas_platyrhynchos_platyrhynchos_22_7870323_7870542_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7870323 - 7870542

Intron Length:

220

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACACA

5'SS Class:

strong_major

3'SS Sequence:

CCCTGCTCCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

GCTTACCTAACG

Flanking Amino Acid:

VEFDVVEGEKGAEAANVTGP

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

36.5

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

66.7

0.38

0.8

29.2

Minor 5ss

-1.2

2.9

49.8

46.2

Minor BPS

53.4

-0

62.19

Associated Gene:

Gene:

YBX1

Ensembl Gene ID:

ENSAPLG00000004899

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048396

7864151 - 7873838

9688

ENSAPLT00000034367

7863898 - 7872669

8772

ENSAPLT00000005056

7864151 - 7873838

9688