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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7870846_7871245_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7870846 - 7871245
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TAATGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTTGCCTAATG
Flanking Amino Acid:
NPPVQGEIVEGADNQGAGEQ
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
76
0.58
1
66.3
44.7
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
51.7
-0
2.2
64.84
43.1

Associated Gene:

Gene:
YBX1
Ensembl Gene ID:
ENSAPLG00000004899
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048396
7864151 - 7873838
9688
ENSAPLT00000034367
7863898 - 7872669
8772
ENSAPLT00000005056
7864151 - 7873838
9688