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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7878382_7878669_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7878382 - 7878669
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TCTGCTTTGAGC
Flanking Amino Acid:
WMVNADDSLEVSHKCRGLWR
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
77.8
0.63
0.8
68.5
37.3
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
54.4
0.12
1.8
64.69
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004732
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004868
7876335 - 7880769
4435