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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7878792_7880638_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7878792 - 7880638
Intron Length:
1847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGACAT
U12 Branch Point Sequence:
GGCAGCAGACAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
49
-0
1.2
56.4
39.5
Major PPT
77.2
0.61
0.9
69.9
36.5
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
31.8
-1.3
1.9
41.62
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004732
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004868
7876335 - 7880769
4435