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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_789218_789454_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
789218 - 789454
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATCA
5'SS Class:
major
3'SS Sequence:
TGTTTCTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CACCATTTAATT
Flanking Amino Acid:
FVYLALKQQKEAVQDLISAL
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
65.9
33.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.7
0.53
0.9
69.7
35.8
Minor 5ss
44.4
-0.6
2.7
57.7
46.4
Minor BPS
52.3
0.15
1.5
63.1
41.5

Associated Gene:

Gene:
TTC34
Ensembl Gene ID:
ENSAPLG00000006420
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006648
784133 - 794768
10636