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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_789622_792869_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
789622 - 792869
Intron Length:
3248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTTCAAGTAAGC
Flanking Amino Acid:
AYLSFAIIASGGSAEDCLLI
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
79.3
0.66
0.9
70.2
40.7
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
42.1
-0.6
2.5
62.11
42.8

Associated Gene:

Gene:
TTC34
Ensembl Gene ID:
ENSAPLG00000006420
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006648
784133 - 794768
10636