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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7926011_7927955_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7926011 - 7927955
Intron Length:
1945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATGCTGTTAATT
Flanking Amino Acid:
PYTLGLFDTAGQEDYDRLRP
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.8
0.69
0.7
73.3
31.6
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
52.2
0.15
2
71.02
40.5

Associated Gene:

Gene:
CDC42
Ensembl Gene ID:
ENSAPLG00000003997
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027729
7921225 - 7932675
11451
ENSAPLT00000039471
7921225 - 7962347
41123
ENSAPLT00000004096
7921225 - 7955123
33899
ENSAPLT00000034098
7921225 - 7990353
69129
ENSAPLT00000043944
7921225 - 8060102
138878
ENSAPLT00000033349
7921225 - 7943199
21975
ENSAPLT00000042314
7921225 - 8080771
159547
ENSAPLT00000029997
7921225 - 7940502
19278
ENSAPLT00000040760
7921225 - 7938320
17096