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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7928066_7928174_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7928066 - 7928174
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGGTCAGTAATA
Flanking Amino Acid:
PSSFENVKEKWVPEITHHCP
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
76.1
34
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
78.3
0.64
0.7
77.3
24.7
Minor 5ss
47.2
-0.3
2.4
61.9
42.9
Minor BPS
49
-0
2.2
65.12
41.5

Associated Gene:

Gene:
CDC42
Ensembl Gene ID:
ENSAPLG00000003997
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027729
7921225 - 7932675
11451
ENSAPLT00000039471
7921225 - 7962347
41123
ENSAPLT00000004096
7921225 - 7955123
33899
ENSAPLT00000034098
7921225 - 7990353
69129
ENSAPLT00000043944
7921225 - 8060102
138878
ENSAPLT00000033349
7921225 - 7943199
21975
ENSAPLT00000042314
7921225 - 8080771
159547
ENSAPLT00000029997
7921225 - 7940502
19278
ENSAPLT00000040760
7921225 - 7938320
17096