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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7934047_7940405_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7934047 - 7940405
Intron Length:
6359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTGATAACT
Flanking Amino Acid:
LEPPEPKKTRRSGLMWVPSA
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
31.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.9
0.74
0.8
81.2
36.5
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
55.8
0.26
2.3
82.93
38.1

Associated Gene:

Gene:
CDC42
Ensembl Gene ID:
ENSAPLG00000003997
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029997
7921225 - 7940502
19278