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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7934047_7942667_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7934047 - 7942667
Intron Length:
8621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTGACCCAGAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
ATCTCCAGAGCC
Flanking Amino Acid:
LEPPEPKKTRRCVLRYLCTS
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
31.9
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
42.7
-0.4
1.7
39.3
39.3
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
47.9
-0.1
2
63.05
41.9

Associated Gene:

Gene:
CDC42
Ensembl Gene ID:
ENSAPLG00000003997
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033349
7921225 - 7943199
21975