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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7934047_7955110_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7934047 - 7955110
Intron Length:
21064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CCTCCCTTTACA
Flanking Amino Acid:
LEPPEPKKTRRVPV*
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
31.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
74.8
0.56
0.9
73.8
35.5
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
62.9
0.4
1.7
68.86
43.2

Associated Gene:

Gene:
CDC42
Ensembl Gene ID:
ENSAPLG00000003997
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004096
7921225 - 7955123
33899