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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7934047_7990229_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7934047 - 7990229
Intron Length:
56183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGAGCTCTAACT
Flanking Amino Acid:
LEPPEPKKTRSTNGMSPDGR
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
31.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
93.6
0.98
0.6
92.3
18
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
56.8
0.29
1.8
74.33
42.2

Associated Gene:

Gene:
CDC42
Ensembl Gene ID:
ENSAPLG00000003997
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034098
7921225 - 7990353
69129