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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7934047_8058220_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7934047 - 8058220
Intron Length:
124174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TCTCTCCCATCT
Flanking Amino Acid:
LEPPEPKKTRRQTTPVCCTS
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
31.9
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
76.1
0.59
0.8
73.3
31.2
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
44.6
-0.3
2
66.08
44.3

Associated Gene:

Gene:
CDC42
Ensembl Gene ID:
ENSAPLG00000003997
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043944
7921225 - 8060102
138878