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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7934047_8079761_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7934047 - 8079761
Intron Length:
145715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATTAC
U12 Branch Point Sequence:
ATTACCCCAAAT
Flanking Amino Acid:
LEPPEPKKTRRTV*
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
31.9
Major BPS
54.7
0.12
1.1
47.4
35.7
Major PPT
85.2
0.79
0.9
76.9
42.1
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
49.3
0.02
2
74.4
41.3

Associated Gene:

Gene:
CDC42
Ensembl Gene ID:
ENSAPLG00000003997
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042314
7921225 - 8080771
159547