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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7963550_7963750_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7963550 - 7963750
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGTG
5'SS Class:
major
3'SS Sequence:
CTCGCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATATCT
Flanking Amino Acid:
NLHNNEAGRKAILNNMRVEC
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.7
40.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75
0.56
0.8
65.4
36.2
Minor 5ss
32.9
-2
3.6
46.5
48.8
Minor BPS
57.5
0.31
1.9
82.25
38.8

Associated Gene:

Gene:
WNT4
Ensembl Gene ID:
ENSAPLG00000017855
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032035
7962082 - 7977698
15617