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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7966776_7977587_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7966776 - 7977587
Intron Length:
10812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
GCTGTTGTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TGCCTCCTAACC
Flanking Amino Acid:
ATFSANASNWLYLAKLSSVG
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
72
0.55
1
71.8
31.4
Major PPT
65.5
0.35
1.1
60.9
44.7
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
55.1
0.14
1.7
65.1
40.1

Associated Gene:

Gene:
WNT4
Ensembl Gene ID:
ENSAPLG00000017855
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032035
7962082 - 7977698
15617