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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_8113_9925_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8113 - 9925
Intron Length:
1813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGACT
5'SS Class:
major
3'SS Sequence:
TGTGTCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
TTTTCCTGAGGT
Flanking Amino Acid:
LKWDHFNLTYKILSFPRNLI
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71.5
38
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
77.4
0.62
0.9
70.4
36.3
Minor 5ss
42.7
-0.8
3.1
58.5
40.2
Minor BPS
60.9
0.42
2
85.09
41.2

Associated Gene:

Gene:
MMP23B
Ensembl Gene ID:
ENSAPLG00000012333
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012849
7952 - 15233
7282