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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_103152_103495_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103152 - 103495
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGCCAG
5'SS Class:
major
3'SS Sequence:
TTGTCTCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTTTTCTCACCC
Flanking Amino Acid:
MRQSTSYGRLRHAQSRSMND
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.4
50.6
47.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76
0.58
0.9
75.3
34.5
Minor 5ss
38.2
-1.3
3
43.1
44.3
Minor BPS
57
0.2
1.8
71
40.3

Associated Gene:

Gene:
SLC4A5
Ensembl Gene ID:
ENSAPLG00000007031
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007368
85668 - 113226
27559