About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1060493_1067101_F

Intron Information:

Intron Rank:
133973
Intron Class:
major
Intron Phase:
Intron Coordinates:
1060493 - 1067101
Intron Length:
6609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCTTTCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
84.5
0.78
0.8
81.1
30.9
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
49.5
0.04
1.8
71.91
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022047
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036089
1060470 - 1068486
8017