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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1073132_1073298_F

Intron Information:

Intron Rank:
148625
Intron Class:
major
Intron Phase:
Intron Coordinates:
1073132 - 1073298
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGCTTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGGTTCTCATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
78
38.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.3
0.66
0.9
72.9
37.4
Minor 5ss
36.5
-1.5
2.7
41.6
38.2
Minor BPS
44.7
-0.4
2
54.61
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030019
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021355
1073123 - 1079047
5925