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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_112890_113132_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112890 - 113132
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TGCTCTCTAAAG
Flanking Amino Acid:
SSRRRYDDEEDYHSIYIGVP
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
73
0.57
1
73.6
28.6
Major PPT
72.8
0.51
0.8
64.3
31
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
50
-0.1
1.9
58.05
43.4

Associated Gene:

Gene:
SLC4A5
Ensembl Gene ID:
ENSAPLG00000007031
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007368
85668 - 113226
27559