About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1130444_1132182_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1130444 - 1132182
Intron Length:
1739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATAG
5'SS Class:
major
3'SS Sequence:
CTGTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATGCCTTTAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
63.7
37.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.5
0.78
0.8
77
37.3
Minor 5ss
42.7
-0.8
3
55.2
49
Minor BPS
64.9
0.33
1.3
62.93
39.5

Associated Gene:

Gene:
LRRTM4
Ensembl Gene ID:
ENSAPLG00000002047
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002042
1130231 - 1136547
6317