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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1132464_1132717_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1132464 - 1132717
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCGGCA
5'SS Class:
major
3'SS Sequence:
TTGTCCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CCTTCCTCATCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
57.8
41.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
78.1
0.63
0.8
70.6
36.2
Minor 5ss
34
-1.8
3.7
47.9
47.7
Minor BPS
55.8
0.16
1.9
66.27
45.4

Associated Gene:

Gene:
LRRTM4
Ensembl Gene ID:
ENSAPLG00000002047
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002042
1130231 - 1136547
6317