About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1136542_1212857_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1136542 - 1212857
Intron Length:
76316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTATCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTTCTGTAATT
Flanking Amino Acid:
YTISGSRECEVKMIPLG*
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74.3
34.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.5
0.69
0.9
74.3
40.6
Minor 5ss
40.8
-1
2.8
53
43.8
Minor BPS
64.9
0.55
2
84.22
37.1

Associated Gene:

Gene:
LRRTM4
Ensembl Gene ID:
ENSAPLG00000002047
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020261
1132718 - 1216338
83621