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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_118610_130937_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118610 - 130937
Intron Length:
12328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ATGCATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GTGGCTTTAACA
Flanking Amino Acid:
GIVCSMLLPQVVGLVMAWLY
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
76.2
0.59
0.9
69.6
40.7
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
68.8
0.59
1.4
71.61
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007904
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044748
118388 - 173720
55333
ENSAPLT00000022138
118388 - 173720
55333
ENSAPLT00000008222
118388 - 196017
77630