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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_131688_139032_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
131688 - 139032
Intron Length:
7345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TTTGCACTAATT
Flanking Amino Acid:
GVPYTCCIRKVPGEVINTLC
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
82.3
0.73
0.8
76.6
32
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
56.4
0.28
2
81.93
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007904
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044748
118388 - 173720
55333
ENSAPLT00000022138
118388 - 173720
55333
ENSAPLT00000008222
118388 - 196017
77630