About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_13398_14002_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
13398 - 14002

Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTCAGTCTT

5'SS Class:
strong_major

3'SS Sequence:
TTGTTTCTTGTAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTTTTATGAAAT

Flanking Amino Acid:
TYTTRYYRPEELPATLCYSK

Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
82.3
0.76
1.2
81.8
38.5

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
85.2
0.79
0.7
81.6
30.5

Minor 5ss
35.6
-1.6
3
50.5
45.8

Minor BPS
59.8
0.38
1.8
83.46
36.6

Associated Gene:

Gene:
DUSP11

Ensembl Gene ID:

Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

11884 - 16882
4999

12642 - 17198
4557