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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1341111_1342915_F

Intron Information:

Intron Rank:
126399
Intron Class:
major
Intron Phase:
Intron Coordinates:
1341111 - 1342915
Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GCTTCTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
62.8
0.48
1.7
77.07
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018106
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043046
1340787 - 1343121
2335