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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1344984_1427224_F

Intron Information:

Intron Rank:
139715
Intron Class:
major
Intron Phase:
Intron Coordinates:
1344984 - 1427224
Intron Length:
82241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TTTATGATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.8
40.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.3
0.61
0.9
74.8
39.8
Minor 5ss
34.8
-1.7
2.8
36.3
40.5
Minor BPS
56.4
0.28
1.5
75.77
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025124
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033457
1344652 - 1428055
83404