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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_139147_147920_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139147 - 147920
Intron Length:
8774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGATTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CATGTCTCACTC
Flanking Amino Acid:
KNILDFVQEKFSCCGGDEYR
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
75.4
34.8
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
46.3
-0.4
2.8
65.6
45.6
Minor BPS
44.3
-0.4
1.8
50.54
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007904
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044748
118388 - 173720
55333
ENSAPLT00000022138
118388 - 173720
55333
ENSAPLT00000008222
118388 - 196017
77630