Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1429115_1430792_F

Intron Information:

Intron Rank:

139714

Intron Class:

major

Intron Phase:

Intron Coordinates:

1429115 - 1430792

Intron Length:

1678

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAGGTTAT

5'SS Class:

major

3'SS Sequence:

TGCTGTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTAAT

U12 Branch Point Sequence:

ATGTAGTGAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.7

0.44

1.1

38.5

Major BPS

67.8

0.44

1.1

67.7

36.5

Major PPT

82.9

0.74

0.9

80.2

37.3

Minor 5ss

42.7

-0.8

3.2

62.7

43.1

Minor BPS

46.6

-0.1

2.2

68.21

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025124

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043949

1409820 - 1431795

21976

ENSAPLT00000033059

1427215 - 1431795

4581