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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1435876_1467383_F

Intron Information:

Intron Rank:
145666
Intron Class:
major
Intron Phase:
Intron Coordinates:
1435876 - 1467383
Intron Length:
31508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTATGCTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CGTGGTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.4
37.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
65.2
0.34
1
62.5
44.1
Minor 5ss
30.1
-2.3
2.6
34.1
41.4
Minor BPS
48.3
-0
2
65.2
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028495
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044828
1435741 - 1471126
35386